IEEG-Recon¶
IEEG-recon is a modular pipeline used to reconstruct intracranial electrode coordinates from a post-implant CT scan, into a pre-implant MRI. The pipeline is available in both MATLAB and python computing environments.
iEEG-Recon is divided into 3 modules:
Module 1 consists of an electrode labeling GUI called VoxTool, which allows the user to label electrode locations in the post-implant CT scan.
Module 2 registers the CT scan to the pre-implant MRI and transforms the VoxTool-generated coordinates from CT space to MRI space
Module 3 maps each electrode to a specific ROI defined by a brain atlas registered to the pre-implant MRI
Please Cite Us!¶
If you use IEEG-recon, please cite our paper: Alfredo Lucas, Brittany H Scheid, Akash Ranjan Pattnaik, Ryan Gallagher, Marissa Mojena, Ashley Tranquille, Brian Prager, Ezequiel Gleichgerrcht, Ruxue Gong, Brian Litt, Kathryn A Davis, Sandhitsu Das, Joel M Stein, & Nishant Sinha. (2023). iEEG-recon: A Fast and Scalable Pipeline for Accurate Reconstruction of Intracranial Electrodes and Implantable Devices. MedRxiv, 2023.06.12.23291286. https://doi.org/10.1101/2023.06.12.23291286
Check out the Getting Started section for further information, including project Installation.
