• Subject ID: sub-RID0922
• Clinical Session: ses-clinical01
• Reference Session: ses-clinical01
• Subject Source Directory: /exampleData/sub-RID0922
• Subject Derivatives Output Directory: /exampleData/sub-RID0922/derivatives

Anatomical Conformation

• Input T1w image (reference MRI): sub-RID0922_ses-clinical01_acq-3D_space-T00mri_T1w.nii.gz
• Input CT image (post-implant CT): sub-RID0922_ses-clinical01_acq-3D_space-T01ct_ct.nii.gz
• Output orientation: RAS

Results of Pre-Implant MRI to Post-Implant CT Registration

Results of the linear (6 d.o.f) alignment of the T1w reference onto the post-implant CT. Hover on the panels with the mouse pointer to transition between both spaces.

Transformed Electrodes Scatterplot

The scatterplot below shows the final electrode locations in the space of the reference image (traditionally the pre-implant MRI), with the thresholded CT scan also in the reference image space. If everything aligns appropriately here, all of the previous steps in the pipeline worked successfully.